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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2972416_2972547_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2972416 - 2972547
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
CATTTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCCCCCCCATTT
Flanking Amino Acid:
HTCEKCGSSIATQAVRIQEG
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
56.7
45
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
78
0.63
0.8
69.8
36.3
Minor 5ss
35.1
-1.7
2.8
35.7
41.3
Minor BPS
39.6
-0.7
1.9
49.84
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027885
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040461
2972035 - 2976475
4441
ENSAPLT00000026570
2971238 - 2976475
5238