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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2975623_2976025_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2975623 - 2976025
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
GTCCCCTTCTCC
Flanking Amino Acid:
DFGKPITVSKVMEQGKAAAG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
59.7
0.22
1.7
69
31.5
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
40.4
-0.7
3.5
60.42
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027885
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040461
2972035 - 2976475
4441
ENSAPLT00000026570
2971238 - 2976475
5238