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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2978810_2978887_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2978810 - 2978887
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGTGGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCGGCCTCACCG
Flanking Amino Acid:
DAAVRRRLVRGGVPEDAEIR
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
57.7
42
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
80.4
0.68
0.7
72.7
32.1
Minor 5ss
26.1
-2.7
3.1
25.8
37
Minor BPS
43.5
-0.6
2
42.53
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026511
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045732
2978434 - 2981878
3445