About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2993446_2994383_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
2993446 - 2994383

Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACCCAGC

5'SS Class:
major

3'SS Sequence:
TTTTCTCCCCAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTCT

U12 Branch Point Sequence:
TTTCTCCCCAAG

Flanking Amino Acid:
EDHYISSYPKGGTTVRKEII

Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
65.8
0.37
1.3
58.2
46.8

Major BPS
38.1
-0.7
4.3
71.7
44.6

Major PPT
73.3
0.53
1
72.4
32.7

Minor 5ss
44.2
-0.6
2.9
61.3
43.2

Minor BPS
39.1
-1
2.2
50.99
42.8

Associated Gene:

Gene:
PPP3CC

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2987768 - 3010500
22733

2987768 - 3010500
22733