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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2997070_2997154_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2997070 - 2997154
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACCTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
CACGCCTGACCT
Flanking Amino Acid:
VIRAHEAQDAGYRMYRKSQT
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
75.1
0.57
0.9
65.2
40.6
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
47.5
-0.1
1.9
61.45
48

Associated Gene:

Gene:
PPP3CC
Ensembl Gene ID:
ENSAPLG00000013030
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038121
2987768 - 3010500
22733
ENSAPLT00000013618
2989772 - 3010500
20729
ENSAPLT00000040416
2987768 - 3010500
22733