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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2997233_2997767_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2997233 - 2997767
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTGTGCTAACG
Flanking Amino Acid:
NTVRGCSYFYSYPAVCDFLQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
44
-0.5
2.4
54.84
46.5

Associated Gene:

Gene:
PPP3CC
Ensembl Gene ID:
ENSAPLG00000013030
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040416
2987768 - 3010500
22733
ENSAPLT00000038121
2987768 - 3010500
22733
ENSAPLT00000013618
2989772 - 3010500
20729