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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3001741_3010448_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3001741 - 3010448
Intron Length:
8708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTTTTCCTAACG
Flanking Amino Acid:
KLPTTERIVKAVPFPPTQRL
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.6
41.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88.5
0.87
0.7
83.8
24.3
Minor 5ss
25.7
-2.8
2.9
22.3
37.3
Minor BPS
65.8
0.36
1.8
72.75
39.6

Associated Gene:

Gene:
PPP3CC
Ensembl Gene ID:
ENSAPLG00000013030
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013618
2989772 - 3010500
20729
ENSAPLT00000040416
2987768 - 3010500
22733
ENSAPLT00000038121
2987768 - 3010500
22733