About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3018003_3018470_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3018003 - 3018470
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
CTCTTACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CGCCTCTTACCC
Flanking Amino Acid:
SNALFQLIPEAFGFNPQEDY
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
69.2
0.48
1
61
37.1
Major PPT
75.5
0.57
0.8
69.8
29.8
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
49.6
-0
1.7
55.58
42.9

Associated Gene:

Gene:
SLC39A14
Ensembl Gene ID:
ENSAPLG00000013774
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014353
3015855 - 3024326
8472