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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3018641_3020557_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3018641 - 3020557
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
ACGGCCGCCGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
TTTTTTGGCACG
Flanking Amino Acid:
TEESRPSSAEVWGYGFLCVT
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
50
0
1.5
63.1
44.5
Major PPT
55.3
0.12
1
46.7
36
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
42.7
-0.7
2.4
58.97
43.4

Associated Gene:

Gene:
SLC39A14
Ensembl Gene ID:
ENSAPLG00000013774
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014353
3015855 - 3024326
8472