About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3021500_3023614_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3021500 - 3023614
Intron Length:
2115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACCC
Flanking Amino Acid:
RKRRRRRRRRGPPKCCGAGE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79
0.65
0.7
74
24.2
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
51.3
0.02
1.8
62.1
43.7

Associated Gene:

Gene:
SLC39A14
Ensembl Gene ID:
ENSAPLG00000013774
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014353
3015855 - 3024326
8472