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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3035484_3035613_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3035484 - 3035613
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
CCCCCGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTAAAT
U12 Branch Point Sequence:
TGTAGGGTAAAT
Flanking Amino Acid:
PNIISRKIKEEPREDVTVKK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
60.9
0.25
0.9
51.9
36.7
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
38.1
-0.8
2.8
62.53
46.9

Associated Gene:

Gene:
POLR3D
Ensembl Gene ID:
ENSAPLG00000014393
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014999
3033902 - 3039556
5655