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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3039499_3039665_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3039499 - 3039665
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
GCCTCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CGTGCTCTAACG
Flanking Amino Acid:
ERNLLTKNRDRFTQNLSAFR
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.3
0.5
0.8
69
31.5
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
49.4
-0.1
1.9
56.32
45.2

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635