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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3040179_3041940_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3040179 - 3041940
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTCCCTCTTACA
Flanking Amino Acid:
MQQHPEMIQQMLSTVLNIII
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
85.3
0.8
0.7
79.6
25.9
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
48.9
-0
2
65.58
40.5

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635