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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3042102_3042404_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3042102 - 3042404
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTATCTCCATCT
Flanking Amino Acid:
SSISEGLTALDTMVCTGCCS
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
69.7
41.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
41
-1
2.8
54.5
42.6
Minor BPS
45.2
-0.2
2.1
65.67
44.8

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635