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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3042544_3043580_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3042544 - 3043580
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGGCAA
U12 Branch Point Sequence:
GAGGCCTCACGC
Flanking Amino Acid:
LLSIPHSDLLDYPKLSQSYY
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
47.2
-0.1
1.4
55.4
42
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
40.5
-0.7
2
44.16
43.6

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635