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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3045636_3046344_R

Intron Information:

Intron Rank:
20
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
3045636 - 3046344
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TCTCCCCTTGCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAG
U12 Branch Point Sequence:
CCTTCCTTAGCT
Flanking Amino Acid:
KTSFMMLFEWIYPSYMPILQ
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
58.8
41.3
Major BPS
54.9
0.12
1.6
53.6
43.8
Major PPT
83
0.74
0.7
76.9
25
Minor 5ss
93.5
1.46
0.8
89
23.2
Minor BPS
72.8
0.79
1.6
83.67
43.5

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635