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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3046434_3046760_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3046434 - 3046760
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATGTTTTAACG
Flanking Amino Acid:
TNTFNEQEAKRTLVGLVRDL
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.5
0.51
1
67.2
38.1
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
59.4
0.16
1.5
59.25
43.2

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635