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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3047191_3048279_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3047191 - 3048279
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCCCCTTTAACC
Flanking Amino Acid:
AVQFMLNNHTSEHFSFLGIN
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
85.4
0.8
0.8
79.9
32.1
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
70.8
0.63
1.3
71.37
40.3

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635