About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3048335_3048806_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3048335 - 3048806
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGTGCAGG
5'SS Class:
major
3'SS Sequence:
GTACATACAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GCTTCCTTAACG
Flanking Amino Acid:
SIGYPFGKSSGVRKLVKLSA
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.1
52.3
46.1
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
59.2
0.21
1
52.9
40.9
Minor 5ss
39
-1.2
2.7
39.5
46.2
Minor BPS
80.9
0.83
1.3
76.24
41.3

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635