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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3053500_3054581_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3053500 - 3054581
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTCTAATCT
Flanking Amino Acid:
SRLESVHIILRDGLEDPLDD
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.1
0.59
0.9
71.5
38.4
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
57.6
0.32
2
78.81
43.9

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635