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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3054755_3055539_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3054755 - 3055539
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAAT
5'SS Class:
major
3'SS Sequence:
TTGCTCTCGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TTTTCCTTTCTT
Flanking Amino Acid:
IANFTVTSLQHWEFAPNSVH
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71.4
40.2
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
68.7
0.42
1
66.3
35.7
Minor 5ss
39.3
-1.2
3.3
57
47.3
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635