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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3055687_3055898_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3055687 - 3055898
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAATT
Flanking Amino Acid:
GVKRILENPQSLSDPNNYHE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.4
0.73
0.7
80.6
24.7
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
69
0.67
1.6
83.97
37.3

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635