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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3057489_3058060_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3057489 - 3058060
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
CATTCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTCAGTAAAG
Flanking Amino Acid:
TVQIPTSWRSAFLDSSTLQL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
79.9
0.67
0.9
76.7
37
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
47.4
-0.3
2.4
61.84
45.5

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635