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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3063851_3065728_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3063851 - 3065728
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGATT
5'SS Class:
major
3'SS Sequence:
TCTCCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CCACCACTAACT
Flanking Amino Acid:
VITDVTRFLQDSVEHCIIGV
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
82.5
37
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
81.9
0.72
0.7
80.4
24.9
Minor 5ss
33.6
-1.9
3.3
48.8
47
Minor BPS
47.7
-0.1
2
64.52
45

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635