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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3066823_3068289_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3066823 - 3068289
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
KCQLLLERGSSSYSQLLAAT
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
68.8
37.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
43.1
-0.8
2.6
51.2
45.5
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
XPO7
Ensembl Gene ID:
ENSAPLG00000012460
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013112
3039405 - 3072039
32635