Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3114718_3121228_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3114718 - 3121228

Intron Length:

6511

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGGT

5'SS Class:

major

3'SS Sequence:

GCTCTCGGGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

TTCCCCATATCT

Flanking Amino Acid:

YWSIHLGLTEGMDPATNSKS

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

43.2

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

57.6

0.17

1.1

53.3

41.5

Minor 5ss

29.9

-2.3

3.8

46.9

48.5

Minor BPS

56.4

0.28

1.9

78.59

43.2

Associated Gene:

Gene:

GFRA2

Ensembl Gene ID:

ENSAPLG00000012246

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018084

3114402 - 3130326

15925