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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3121578_3128945_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3121578 - 3128945
Intron Length:
7368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAAAT
U12 Branch Point Sequence:
TGTTTCTGCCCC
Flanking Amino Acid:
RNVCRADHLCRSRLADFHAN
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
78.1
0.63
0.8
69.8
36.6
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
39
-0.8
3.5
63.34
42.2

Associated Gene:

Gene:
GFRA2
Ensembl Gene ID:
ENSAPLG00000012246
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026330
3114402 - 3131816
17415
ENSAPLT00000018084
3114402 - 3130326
15925
ENSAPLT00000012767
3114402 - 3130504
16103