About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3129562_3129942_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3129562 - 3129942
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
GAGTAATTACCT
Flanking Amino Acid:
SIITTCTSIQLPLRETISGS
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
80.9
0.7
0.8
73.5
37.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
46.8
-0.1
2
64.47
45

Associated Gene:

Gene:
GFRA2
Ensembl Gene ID:
ENSAPLG00000012246
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012767
3114402 - 3130504
16103