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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3129562_3130450_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3129562 - 3130450
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
CTGCCCTGAGCC
Flanking Amino Acid:
SIITTCTSIQEHGQKLNKSK
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
78.7
0.65
0.7
69.6
31.2
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
49.9
-0
1.8
60.89
44

Associated Gene:

Gene:
GFRA2
Ensembl Gene ID:
ENSAPLG00000012246
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026330
3114402 - 3131816
17415