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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_316992_344169_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
316992 - 344169
Intron Length:
27178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTGTACTGAATG
Flanking Amino Acid:
QVTVDEVLAEGGFAIVFLVR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
58.6
0.13
1.7
65.37
42.5

Associated Gene:

Gene:
AAK1
Ensembl Gene ID:
ENSAPLG00000002094
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031090
316657 - 402033
85377
ENSAPLT00000047235
316657 - 402033
85377
ENSAPLT00000024110
316657 - 393403
76747
ENSAPLT00000042003
316657 - 391709
75053
ENSAPLT00000019623
316657 - 402033
85377
ENSAPLT00000040319
316657 - 393403
76747
ENSAPLT00000002277
316657 - 387455
70799
ENSAPLT00000037468
316657 - 402033
85377