Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_31921_32325_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31921 - 32325

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTATTTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

ATGTGTTTATTT

Flanking Amino Acid:

IAIVCSPKYQETGFFKLTEH

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

80.8

33.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

77.3

0.62

0.9

70.4

Minor 5ss

40.6

-1.1

2.8

47.9

41.8

Minor BPS

49.6

0.05

69.42

42.6

Associated Gene:

Gene:

STAMBP

Ensembl Gene ID:

ENSAPLG00000005548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017577

19098 - 34623

15526

ENSAPLT00000005765

18031 - 34623

16593