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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3271090_3273118_R

Intron Information:

Intron Rank:
139887
Intron Class:
major
Intron Phase:
Intron Coordinates:
3271090 - 3273118
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAGTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
0.8
74.7
35.2
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
67.7
0.63
1.3
77.76
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022661
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039224
3268275 - 3273191
4917