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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3304702_3305131_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3304702 - 3305131
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GCTTCCTCAAAT
Flanking Amino Acid:
MSSYAEALREVSAAREEVPG
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
82
38.1
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
77
0.61
0.9
73.7
35.9
Minor 5ss
44.2
-0.6
3.2
66.1
45
Minor BPS
65
0.55
1.7
78.72
42.9

Associated Gene:

Gene:
ATP6V1B2
Ensembl Gene ID:
ENSAPLG00000016273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016989
3303021 - 3308255
5235