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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3306061_3306181_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3306061 - 3306181
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GATGGACTAATA
Flanking Amino Acid:
FSAAGLPHNEIAAQICRQAG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
83.3
0.75
0.6
81.8
23.1
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
40.5
-0.7
2.2
51.22
40.2

Associated Gene:

Gene:
ATP6V1B2
Ensembl Gene ID:
ENSAPLG00000016273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016989
3303021 - 3308255
5235