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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3306875_3306974_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3306875 - 3306974
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTATTTTATT
Flanking Amino Acid:
LRTPVSEDMLGRVFNGSGKP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.5
0.71
0.8
77.3
31.5
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
56.1
0.27
1.8
76.36
40.6

Associated Gene:

Gene:
ATP6V1B2
Ensembl Gene ID:
ENSAPLG00000016273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016989
3303021 - 3308255
5235