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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3314472_3314650_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3314472 - 3314650
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TTTTCTCCCATT
Flanking Amino Acid:
VNPFVGLLTNRIGYHIPMFI
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
66.5
44.9
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
80.9
0.7
0.8
77.7
29.4
Minor 5ss
33.5
-1.9
3
42.2
44.5
Minor BPS
47.6
-0.1
2.2
76.58
40.6

Associated Gene:

Gene:
SLC18A1
Ensembl Gene ID:
ENSAPLG00000002293
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002318
3313289 - 3319564
6276