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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3315070_3315177_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3315070 - 3315177
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
GTTAGCTCAGTG
Flanking Amino Acid:
GVGSSFSSVAGLGMLASIYT
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
70.6
0.46
0.8
61.2
35.1
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
42.2
-0.7
2.1
49.29
44.5

Associated Gene:

Gene:
SLC18A1
Ensembl Gene ID:
ENSAPLG00000002293
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002318
3313289 - 3319564
6276