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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3316873_3318132_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3316873 - 3318132
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGCGCC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTC
Flanking Amino Acid:
QTMCSPKWQLGMAFLPASIS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.1
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.8
0.76
0.7
76.7
32
Minor 5ss
36.7
-1.5
3.6
51.1
45.7
Minor BPS
61.1
0.33
1.5
68.82
37.9

Associated Gene:

Gene:
SLC18A1
Ensembl Gene ID:
ENSAPLG00000002293
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002318
3313289 - 3319564
6276