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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3321737_3321851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3321737 - 3321851
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCGTCACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTCAC
U12 Branch Point Sequence:
TCCCTCGTCACT
Flanking Amino Acid:
GNKQFCSYKIRTKTQGFCRN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
62.4
0.31
1.2
65.3
41.6
Major PPT
76.7
0.6
0.9
70
35.4
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
44.8
-0.3
2.3
63.99
46.6

Associated Gene:

Gene:
MAK16
Ensembl Gene ID:
ENSAPLG00000028345
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037152
3321186 - 3332470
11285