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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3322116_3322233_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3322116 - 3322233
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
CCCCCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAACCCTAATC
Flanking Amino Acid:
APFPSRLWERVLLSKNYEKA
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.9
0.45
0.8
60.4
29.4
Minor 5ss
39.7
-1.2
3.1
47.2
48.2
Minor BPS
56.3
0.18
1.7
64.86
40.6

Associated Gene:

Gene:
MAK16
Ensembl Gene ID:
ENSAPLG00000028345
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037152
3321186 - 3332470
11285