About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3322738_3322826_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
3322738 - 3322826

Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAACGTGG

5'SS Class:
major

3'SS Sequence:
TTTGCTCTGGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTGAC

U12 Branch Point Sequence:
GTGTGCTGACAC

Flanking Amino Acid:
KIERREKRREEKALIAAQLD

Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.2
0.57
1.2
61.3
45.8

Major BPS
66.3
0.4
1.1
57
41.8

Major PPT
72.6
0.51
1
70
36.5

Minor 5ss
41.7
-0.9
3.2
55.9
48.3

Minor BPS
42.7
-0.5
2.1
53.19
44

Associated Gene:

Gene:
MAK16

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3321186 - 3332470
11285