About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3322902_3323242_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3322902 - 3323242
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
TTCCCCTCAGCA
Flanking Amino Acid:
ELLERLKQDTYGDIYNFPIH
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
77.3
37.9
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
37.3
-1.4
3.3
52.9
44.1
Minor BPS
55.5
0.17
1.8
69.44
42.6

Associated Gene:

Gene:
MAK16
Ensembl Gene ID:
ENSAPLG00000028345
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037152
3321186 - 3332470
11285