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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3323363_3323450_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3323363 - 3323450
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CGTTTCTTACAG
Flanking Amino Acid:
KEEEEDEDKEETDEREFVEA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
85.4
0.8
0.8
79.9
32.3
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
50.3
-0.1
1.8
56.62
44.8

Associated Gene:

Gene:
MAK16
Ensembl Gene ID:
ENSAPLG00000028345
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037152
3321186 - 3332470
11285