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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3324457_3324627_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3324457 - 3324627
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AGTGACCTAACT
Flanking Amino Acid:
LDRCSVGQVKILLEGVYSSC
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
78.3
0.64
0.9
69.2
41.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
51.5
0.13
2
73.36
42.7

Associated Gene:

Gene:
TTI2
Ensembl Gene ID:
ENSAPLG00000002866
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002900
3323376 - 3327134
3759