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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3328429_3328695_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3328429 - 3328695
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGCA
5'SS Class:
major
3'SS Sequence:
TCATCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCATCCCTAACC
Flanking Amino Acid:
GDARRLNVHGQTCAVCLEDF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62
38.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75
0.56
0.8
69.6
30.8
Minor 5ss
30.7
-2.2
3.2
30.5
42.8
Minor BPS
62.1
0.36
1.8
67.89
43.4

Associated Gene:

Gene:
RNF122
Ensembl Gene ID:
ENSAPLG00000003031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003080
3328149 - 3333235
5087