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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3328738_3329073_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3328738 - 3329073
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATCCTGATCC
Flanking Amino Acid:
AQSERFGYKEVVLKGDARRL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.7
0.8
0.7
81.5
23.5
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
58.9
0.26
1.8
69.51
41.2

Associated Gene:

Gene:
RNF122
Ensembl Gene ID:
ENSAPLG00000003031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003080
3328149 - 3333235
5087