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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3335508_3335842_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3335508 - 3335842
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTATC
5'SS Class:
major
3'SS Sequence:
CTCCTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CGTTTCTAAACT
Flanking Amino Acid:
EVWPGLYLGDQDIAANRREL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
72
37.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
48.6
-0.1
2.4
68.5
35.9
Minor BPS
66
0.58
1.7
79.89
42.3

Associated Gene:

Gene:
DUSP26
Ensembl Gene ID:
ENSAPLG00000003050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003089
3334647 - 3338119
3473