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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3336116_3338006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3336116 - 3338006
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
GCTTCTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTCTTCTAACA
Flanking Amino Acid:
SEQGKPQPSLRTVGGSSSRR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.1
0.41
1.1
61
44.6
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
51
0.03
1.7
61.67
38.4

Associated Gene:

Gene:
DUSP26
Ensembl Gene ID:
ENSAPLG00000003050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003089
3334647 - 3338119
3473