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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3381096_3382740_R

Intron Information:

Intron Rank:
135391
Intron Class:
major
Intron Phase:
Intron Coordinates:
3381096 - 3382740
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGAA
5'SS Class:
major
3'SS Sequence:
TTACTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTGTATTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.2
30.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
82.6
0.73
0.7
81.5
30.2
Minor 5ss
24.4
-2.9
3.1
25.9
38.1
Minor BPS
59.4
0.28
1.7
71.55
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017870
3381075 - 3382789
1715