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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_3381096_3384994_R

Intron Information:

Intron Rank:
135392
Intron Class:
major
Intron Phase:
Intron Coordinates:
3381096 - 3384994
Intron Length:
3899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTGAG
5'SS Class:
major
3'SS Sequence:
TTACTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTGTATTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
61.4
39.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
82.6
0.73
0.7
81.5
30.2
Minor 5ss
25.6
-2.8
3.1
31.2
42.9
Minor BPS
59.4
0.28
1.7
71.55
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037899
3379871 - 3385678
5808